GitHub - secastel/allelecounter: Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.
![Identification and characterisation of de novo germline structural variants in two commercial pig lines using trio-based whole genome sequencing | BMC Genomics | Full Text Identification and characterisation of de novo germline structural variants in two commercial pig lines using trio-based whole genome sequencing | BMC Genomics | Full Text](https://media.springernature.com/lw685/springer-static/image/art%3A10.1186%2Fs12864-023-09296-3/MediaObjects/12864_2023_9296_Fig1_HTML.png)
Identification and characterisation of de novo germline structural variants in two commercial pig lines using trio-based whole genome sequencing | BMC Genomics | Full Text
The effect of Alternate Allele Depth and Alternate Allele Frequency on... | Download Scientific Diagram
![AAF denotes “alternative allele frequency”, i.e., percentage of reads... | Download Scientific Diagram AAF denotes “alternative allele frequency”, i.e., percentage of reads... | Download Scientific Diagram](https://www.researchgate.net/publication/263296613/figure/fig5/AS:216500796432389@1428629220095/AAF-denotes-alternative-allele-frequency-ie-percentage-of-reads-supporting-the.png)
AAF denotes “alternative allele frequency”, i.e., percentage of reads... | Download Scientific Diagram
![Genes | Free Full-Text | Allele Frequency Difference AFD–An Intuitive Alternative to FST for Quantifying Genetic Population Differentiation Genes | Free Full-Text | Allele Frequency Difference AFD–An Intuitive Alternative to FST for Quantifying Genetic Population Differentiation](https://www.mdpi.com/genes/genes-10-00308/article_deploy/html/images/genes-10-00308-g001.png)
Genes | Free Full-Text | Allele Frequency Difference AFD–An Intuitive Alternative to FST for Quantifying Genetic Population Differentiation
![Distribution of alternative allele frequency and read depth of known... | Download Scientific Diagram Distribution of alternative allele frequency and read depth of known... | Download Scientific Diagram](https://www.researchgate.net/publication/338297281/figure/fig1/AS:842541528272898@1577888962839/Distribution-of-alternative-allele-frequency-and-read-depth-of-known-gold-standard.png)
Distribution of alternative allele frequency and read depth of known... | Download Scientific Diagram
![Alternate allele of Pfs47 polymorphisms by geographic region a Heat map... | Download Scientific Diagram Alternate allele of Pfs47 polymorphisms by geographic region a Heat map... | Download Scientific Diagram](https://www.researchgate.net/publication/354971731/figure/fig1/AS:1073973936791552@1633066748137/Alternate-allele-of-Pfs47-polymorphisms-by-geographic-region-a-Heat-map-of-the-frequency.png)
Alternate allele of Pfs47 polymorphisms by geographic region a Heat map... | Download Scientific Diagram
Insights into the genetic epidemiology of Crohn's and rare diseases in the Ashkenazi Jewish population | PLOS Genetics
![Alternate Allele Frequency plot of prioritized variations in different... | Download Scientific Diagram Alternate Allele Frequency plot of prioritized variations in different... | Download Scientific Diagram](https://www.researchgate.net/publication/357911561/figure/fig2/AS:1126481979813888@1645585641585/Alternate-AlleleFrequency-plot-of-prioritized-variations-in-different-gnomAD-populations.png)
Alternate Allele Frequency plot of prioritized variations in different... | Download Scientific Diagram
![Reference allele and alternative allele/indel frequencies observed for... | Download Scientific Diagram Reference allele and alternative allele/indel frequencies observed for... | Download Scientific Diagram](https://www.researchgate.net/publication/332693754/figure/fig1/AS:752149394907137@1556337798592/Reference-allele-and-alternative-allele-indel-frequencies-observed-for-all-positions-of.png)